A Hierarchical Poisson Log-Normal Model for Network Inference from RNA Sequencing Data
نویسندگان
چکیده
منابع مشابه
A Hierarchical Poisson Log-Normal Model for Network Inference from RNA Sequencing Data
Gene network inference from transcriptomic data is an important methodological challenge and a key aspect of systems biology. Although several methods have been proposed to infer networks from microarray data, there is a need for inference methods able to model RNA-seq data, which are count-based and highly variable. In this work we propose a hierarchical Poisson log-normal model with a Lasso p...
متن کاملA Poisson Log-Normal Model for Constructing Gene Covariation Network Using RNA-seq Data
Constructing expression networks using transcriptomic data is an effective approach for studying gene regulation. A popular approach for constructing such a network is based on the Gaussian graphical model (GGM), in which an edge between a pair of genes indicates that the expression levels of these two genes are conditionally dependent, given the expression levels of all other genes. However, G...
متن کاملA Multivariate Poisson-Log Normal Mixture Model for Clustering Transcriptome Sequencing Data
High-dimensional data of discrete and skewed nature is commonly encountered in high-throughput sequencing studies. Analyzing the network itself or the interplay between genes in this type of data continues to present many challenges. As data visualization techniques become cumbersome for higher dimensions and unconvincing when there is no clear separation between homogeneous subgroups within th...
متن کاملBayesian paradigm for analysing count data in longitudina studies using Poisson-generalized log-gamma model
In analyzing longitudinal data with counted responses, normal distribution is usually used for distribution of the random efffects. However, in some applications random effects may not be normally distributed. Misspecification of this distribution may cause reduction of efficiency of estimators. In this paper, a generalized log-gamma distribution is used for the random effects which includes th...
متن کاملa new approach to credibility premium for zero-inflated poisson models for panel data
هدف اصلی از این تحقیق به دست آوردن و مقایسه حق بیمه باورمندی در مدل های شمارشی گزارش نشده برای داده های طولی می باشد. در این تحقیق حق بیمه های پبش گویی بر اساس توابع ضرر مربع خطا و نمایی محاسبه شده و با هم مقایسه می شود. تمایل به گرفتن پاداش و جایزه یکی از دلایل مهم برای گزارش ندادن تصادفات می باشد و افراد برای استفاده از تخفیف اغلب از گزارش تصادفات با هزینه پائین خودداری می کنند، در این تحقیق ...
15 صفحه اولذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: PLoS ONE
سال: 2013
ISSN: 1932-6203
DOI: 10.1371/journal.pone.0077503